Index

A

aap() (in module neurotools.util.array) abserr() (in module neurotools.linalg.matrix) absorbing_gaussian() (in module neurotools.spatial.kernels) absorbing_laplacian() (in module neurotools.spatial.kernels) abspolar_stats() (in module neurotools.stats.circular) adaptive_density_grid() (in module neurotools.stats.density) adaptive_shuffle() (in module neurotools.stats.shuffleL2explore) adaptive_shuffle_pvalue() (in module neurotools.stats.shuffleL2explore) AdaptiveShuffleResult (class in neurotools.stats.shuffleL2explore) add_circle() (in module neurotools.graphics.ztransform_plot_helpers) add_colorbar() (in module neurotools.graphics.ztransform_plot_helpers) add_column_from_dict() (in module neurotools.util.pandas) add_complex_axes() (in module neurotools.graphics.ztransform_plot_helpers) add_constant() (in module neurotools.stats) add_polygon() (in module neurotools.graphics.plot) addspikes() (in module neurotools.graphics.plot) adjacency1D() (in module neurotools.linalg.operators) adjacency2D() (in module neurotools.linalg.operators) adjacency2D_circular() (in module neurotools.linalg.operators) adjacency2d_rotational() (in module neurotools.linalg.operators) adjust_axis_height_pixels() (in module neurotools.graphics.plot) adjust_xlabel_space() (in module neurotools.graphics.plot) adjust_ylabel_space() (in module neurotools.graphics.plot) adjustmap() (in module neurotools.graphics.plot) alignment_angle() (in module neurotools.stats.covalign) alignment_angle_normalized() (in module neurotools.stats.covalign) alignment_angle_unnormalized() (in module neurotools.stats.covalign) allclose_recursive() (in module neurotools.util.array) allr2 (neurotools.stats.shuffleL2explore.AdaptiveShuffleResult attribute) alternative (neurotools.stats.tests.WeightedTtestResult attribute) amap() (in module neurotools.util.array) amp() (in module neurotools.signal.phase) analytic_signal_coherence() (in module neurotools.spatial.phase) anatomy_axis() (in module neurotools.graphics.plot) ang() (in module neurotools.signal.phase) animate_complex() (in module neurotools.graphics.plot) arenear() (in module neurotools.signal) aresafe() (in module neurotools.signal) argument_signature() (in module neurotools.jobs.ndecorator) array_average_amplitude() (in module neurotools.spatial.array) array_count_centers() (in module neurotools.spatial.array) array_count_critical() (in module neurotools.spatial.array) array_kuramoto() (in module neurotools.spatial.array)

array_kuramoto_pgd() (in module neurotools.spatial.array) array_kuramoto_pgd_standard_deviation() (in module neurotools.spatial.array) array_kuramoto_standard_deviation() (in module neurotools.spatial.array) array_phase_gradient() (in module neurotools.spatial.array) array_phasegradient_local() (in module neurotools.spatial.array) array_phasegradient_magnitude_cv() (in module neurotools.spatial.array) array_phasegradient_magnitude_sigma() (in module neurotools.spatial.array) array_phasegradient_pgd_threshold() (in module neurotools.spatial.array) array_phasegradient_planar() (in module neurotools.spatial.array) array_speed_local() (in module neurotools.spatial.array) array_speed_pgd_threshold() (in module neurotools.spatial.array) array_synchrony() (in module neurotools.spatial.array) array_synchrony_pgd() (in module neurotools.spatial.array) array_synchrony_pgd_standard_deviation() (in module neurotools.spatial.array) array_synchrony_standard_deviation() (in module neurotools.spatial.array) array_wavelength_local() (in module neurotools.spatial.array) array_wavelength_local_pgd_threshold() (in module neurotools.spatial.array) array_wavelength_pgd_threshold() (in module neurotools.spatial.array) array_wavelength_planar() (in module neurotools.spatial.array) arraymap() (in module neurotools.util.array) arrow_between() (in module neurotools.graphics.plot) as_mask() (in module neurotools.spatial.masking) ascolumn() (in module neurotools.linalg.arguments) asiterable() (in module neurotools.util.array) asrow() (in module neurotools.linalg.arguments) assertcolumn() (in module neurotools.linalg.arguments) assertfinite() (in module neurotools.linalg.arguments) assertfinitereal() (in module neurotools.linalg.arguments) assertreal() (in module neurotools.linalg.arguments) assertrow() (in module neurotools.linalg.arguments) assertshape() (in module neurotools.linalg.arguments) assertsquare() (in module neurotools.linalg.arguments) assertvector() (in module neurotools.linalg.arguments) assign_to_regions() (in module neurotools.spatial.points) assquare() (in module neurotools.linalg.arguments) asunit() (in module neurotools.stats.circular) asvector() (in module neurotools.linalg.arguments) atac() (in module neurotools.stats.pvalues) autocorrelation() (in module neurotools.signal) autocorrelation_bayes() (in module neurotools.spikes.convolutional) autopredict() (in module neurotools.linalg.matrix) axes_complement() (in module neurotools.util.array) axvbands() (in module neurotools.graphics.plot) axvstripe() (in module neurotools.graphics.plot)

B

backward_abstract() (in module neurotools.stats.hmm) band_stop_line_noise_removal() (in module neurotools.signal) bandpass_filter() (in module neurotools.signal) barcompare() (in module neurotools.graphics.plot) base64hash() (in module neurotools.jobs.cache) base64hash10bytes() (in module neurotools.jobs.cache) base_legend() (in module neurotools.graphics.plot) baum_welch() (in module neurotools.stats.hmm) benjamini_hochberg_positive_correlations() (in module neurotools.stats.pvalues) BernoulliObservationApproximator (class in neurotools.stats.hmm) BernoulliObservationModel (class in neurotools.stats.hmm) best_rho() (in module neurotools.stats.shuffleL2explore) beta() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) beta_propotion_test() (in module neurotools.stats.tests) beta_regularized_histogram_mutual_information() (in module neurotools.stats.information) betapr() (in module neurotools.stats.information) bin_spike_times() (in module neurotools.spikes) bin_spikes() (in module neurotools.spatial.peaks) bin_spikes_raster() (in module neurotools.spikes) binomial() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) binspace() (in module neurotools.util.array) binto() (in module neurotools.util.array) bit16_print_color() (in module neurotools.graphics.color)

bit16_RGB_to_tuple() (in module neurotools.graphics.color) block_shuffle() (in module neurotools.stats) blockccm() (in module neurotools.spikes.convolutional) blocksta() (in module neurotools.spikes.convolutional) blur() (in module neurotools.spatial.peaks) blurkernel() (in module neurotools.spatial.peaks) blurkernel2D() (in module neurotools.spatial.peaks) bootstrap_compare_mean() (in module neurotools.stats.pvalues) bootstrap_compare_median() (in module neurotools.stats.pvalues) bootstrap_compare_statistic_two_sided() (in module neurotools.stats.pvalues) bootstrap_compare_statistic_two_sided_parallel() (in module neurotools.stats.pvalues) bootstrap_in_blocks() (in module neurotools.stats.pvalues) bootstrap_mean() (in module neurotools.stats.pvalues) bootstrap_median() (in module neurotools.stats.pvalues) bootstrap_statistic() (in module neurotools.stats.pvalues) bootstrap_statistic_two_sided() (in module neurotools.stats.pvalues) border_width() (in module neurotools.graphics.plot) box_filter() (in module neurotools.signal) boxplot_significance() (in module neurotools.graphics.plot) broken_step() (in module neurotools.graphics.plot) brute_force_local_2d_maxima() (in module neurotools.spatial.peaks) bwd() (neurotools.stats.hmm.DiffusionGaussian method) (neurotools.stats.hmm.MVGOUUpdate method) (neurotools.stats.hmm.MVGUpdate method) (neurotools.stats.hmm.OUGaussian method) bytes() (in module neurotools.stats.shuffleL2explore)

C

c2p() (in module neurotools.spatial.points) (in module neurotools.util.tools) cache_test() (in module neurotools.jobs.initialize_system_cache) camel_to_snake() (in module neurotools.util.string) camelcase_columns() (in module neurotools.util.pandas) card_info() (in module neurotools.obsolete.gpu.cu.device) cartesian_product() (in module neurotools.linalg.matrix) ccm() (in module neurotools.spikes.convolutional) ccor() (in module neurotools.spikes.convolutional) ceil_to_precision() (in module neurotools.graphics.plot) centers() (in module neurotools.util.array) check_column_signs() (in module neurotools.util.pandas) check_covmat() (in module neurotools.linalg.matrix) check_covmat_fast() (in module neurotools.linalg.matrix) check_filename() (in module neurotools.jobs.filenames) check_finite_real() (in module neurotools.linalg.matrix) chisquare() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) ChisquareCoxApproximator (class in neurotools.stats.hmm) ChisquareCoxModel (class in neurotools.stats.hmm) choice() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) cholupdate() (in module neurotools.linalg.matrix) cholupdate_eye() (in module neurotools.linalg.matrix) cinv() (in module neurotools.linalg.matrix) circabsdelta() (in module neurotools.stats.circular) circcenter() (in module neurotools.stats.circular) circcorr() (in module neurotools.stats.circular) circdelta() (in module neurotools.stats.circular) circle_mask() (in module neurotools.spatial.peaks) circmce() (in module neurotools.stats.circular) circmean() (in module neurotools.stats.circular) circregress() (in module neurotools.stats.regressions) CircregressResult (class in neurotools.stats.regressions) circular1DblurOperator() (in module neurotools.linalg.operators) circular_cosine_basis() (in module neurotools.signal) circular_derivative_fourier() (in module neurotools.linalg.operators) circular_derivative_operator() (in module neurotools.linalg.operators) circular_gaussian_smooth() (in module neurotools.signal) circular_gaussian_smooth_2D() (in module neurotools.signal) circularly_smooth_colormap() (in module neurotools.graphics.color) circvar() (in module neurotools.stats.circular) circwrap() (in module neurotools.stats.circular) clean_y_range() (in module neurotools.graphics.plot) clear() (in module neurotools.util.tools) clear_memoized() (in module neurotools.jobs.ndecorator) cleartop() (in module neurotools.graphics.plot) close_pool() (in module neurotools.jobs.parallel) closest() (in module neurotools.spatial.points) cmap() (in module neurotools.obsolete.gpu.cpu.util) coalesce() (in module neurotools.spatial.fftzeros) (in module neurotools.spatial.triangulation) coalesce_points() (in module neurotools.spatial.fftzeros) code_to_16bit() (in module neurotools.graphics.color) cohen_d() (in module neurotools.stats.tests)

coherence_pvalue() (in module neurotools.signal.coherence) collect_gaussians() (in module neurotools.spatial.points) collect_in_regions() (in module neurotools.spatial.points) color_boxplot() (in module neurotools.graphics.color) colored_boxplot() (in module neurotools.graphics.plot) colored_violin() (in module neurotools.graphics.plot) column() (in module neurotools.linalg.matrix) combine_caches() (in module neurotools.jobs.cache) complex_axis() (in module neurotools.graphics.plot) complex_gaussian() (in module neurotools.stats.circular) complex_to_nan() (in module neurotools.util.array) complexHLArr2RGB() (in module neurotools.graphics.color) compose() (in module neurotools.obsolete.gpu.cpu.util) confidencebox() (in module neurotools.graphics.plot) configure_matplotlib() (in module neurotools.graphics.ztransform_plot_helpers) conform() (in module neurotools.util.pandas) connect_gaussian() (in module neurotools.obsolete.gpu.cu.graph) construct_lowpass_operator() (in module neurotools.spikes.convolutional) continuum_kernel() (in module neurotools.spatial.kernels) conv() (in module neurotools.spatial.peaks) convenient_morlet() (in module neurotools.signal.morlet) convertToZScores() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) convex_hull() (in module neurotools.spatial.geometry) convex_hull_from_mask() (in module neurotools.spatial.geometry) convolve2dct() (in module neurotools.signal.conv) corr() (in module neurotools.obsolete.gpu.cpu.util) correct_pvalues() (in module neurotools.stats.pvalues) correct_pvalues_positive_dependent() (in module neurotools.stats.pvalues) correlation() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) correlation2() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) cosine_kernel() (in module neurotools.linalg.operators) (in module neurotools.spatial.kernels) (in module neurotools.stats.glm) count_nodes() (in module neurotools.graphics.dendron) counts (neurotools.stats.information.JointCategoricalDistribution attribute) cov() (in module neurotools.obsolete.gpu.cpu.util) covariance() (in module neurotools.stats) covariance_crosshairs() (in module neurotools.graphics.plot) covfrom() (in module neurotools.linalg.operators) cpu() (in module neurotools.obsolete.gpu.cu.function) create_artists() (neurotools.graphics.plot.HandlerSquare method) create_spectral_model() (in module neurotools.spikes.convolutional) crossvalidated_least_squares() (in module neurotools.stats) crossvalidatedAUC() (in module neurotools.stats.glm) csolve() (in module neurotools.linalg.matrix) cspect() (in module neurotools.spikes.convolutional) cspectm() (in module neurotools.spikes.convolutional) csv() (in module neurotools.jobs.closure) cubic_spline_regression() (in module neurotools.stats.regressions) current_milli_time() (in module neurotools.util.time) cut() (in module neurotools.obsolete.gpu.cpu.util) cut_array_data() (in module neurotools.spatial.fftzeros) cut_spikes() (in module neurotools.spikes)

D

damped_cosine() (in module neurotools.stats.regressions) darken() (in module neurotools.graphics.color) (in module neurotools.graphics.plot) darkhues() (in module neurotools.graphics.color) dct_cut() (in module neurotools.spatial.dct) dct_cut_antialias() (in module neurotools.spatial.dct) dct_cut_downsampled() (in module neurotools.spatial.dct) dct_upsample() (in module neurotools.spatial.dct) dct_upsample_notrim() (in module neurotools.spatial.dct) debug() (in module neurotools.util.tools) decode() (neurotools.obsolete.encoding.Huffman.Huffman method) (neurotools.obsolete.encoding.NaryHuffman.NaryHuffman method) deep_map() (in module neurotools.util.array) deep_tuple() (in module neurotools.util.array) degrees_to_survey_format() (in module neurotools.stats.circular) delta() (in module neurotools.linalg.operators) deltaI() (neurotools.stats.information.discrete class method) deltaInoise() (neurotools.stats.information.discrete class method) deltaIshuff() (neurotools.stats.information.discrete class method) deltaIsig() (neurotools.stats.information.discrete class method) deltamag() (in module neurotools.obsolete.gpu.cu.sequence) deltaovermean() (in module neurotools.signal) Description (class in neurotools.stats) dfhcat() (in module neurotools.util.pandas) dfvcat() (in module neurotools.util.pandas) diffuseFT1D() (in module neurotools.linalg.operators) diffusion_basis() (in module neurotools.spatial.kernels) DiffusionGaussian (class in neurotools.stats.hmm) dirichlet() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore)

dirichlet_density (class in neurotools.stats.information) dirichlet_derivative_operator() (in module neurotools.linalg.operators) discard_spikes_closer_than_delta() (in module neurotools.spikes.ppc) discrete (class in neurotools.stats.information) disk_axis() (in module neurotools.graphics.plot) disk_cacher() (in module neurotools.jobs.cache) distance_angular_deviation() (in module neurotools.spatial.distance) DKL() (neurotools.stats.information.discrete class method) do_bode_and_nyquist() (in module neurotools.graphics.ztransform_plot_helpers) do_bode_s() (in module neurotools.graphics.ztransform_plot_helpers) do_bode_z() (in module neurotools.graphics.ztransform_plot_helpers) do_nyquist() (in module neurotools.graphics.ztransform_plot_helpers) document() (in module neurotools.obsolete.gpu.cpu.util) dof (neurotools.stats.tests.WeightedTtestResult attribute) domask() (in module neurotools.graphics.plot) dot() (in module neurotools.obsolete.gpu.cpu.util) dotproducts() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) dowarn() (in module neurotools.util.tools) dPhidx() (in module neurotools.spatial.fftzeros) dPhidy() (in module neurotools.spatial.fftzeros) dpss_cached() (in module neurotools.signal.multitaper) draw_array() (in module neurotools.graphics.matplotlib) (in module neurotools.graphics.pygame) draw_circle() (in module neurotools.graphics.plot) drop_nonfinite() (in module neurotools.signal) dsigmoid() (in module neurotools.util.functions) du() (in module neurotools.jobs.initialize_system_cache) du_izh() (in module neurotools.obsolete.models.izh) dv_izh() (in module neurotools.obsolete.models.izh) dx_op() (in module neurotools.spatial.peaks)

E

edgesNearby() (in module neurotools.spatial.triangulation) eformat() (in module neurotools.util.string) elem() (in module neurotools.obsolete.gpu.cpu.util) elemental() (in module neurotools.obsolete.gpu.cl.function) ElementwiseKernel() (in module neurotools.obsolete.gpu.cu.plot) (in module neurotools.obsolete.gpu.cu.statistics) emitter (class in neurotools.util.tools) enable_vsync() (in module neurotools.graphics.pygame) encode() (neurotools.obsolete.encoding.Huffman.Huffman method) (neurotools.obsolete.encoding.NaryHuffman.NaryHuffman method) encode_packets() (neurotools.obsolete.encoding.Huffman.Huffman method) (neurotools.obsolete.encoding.NaryHuffman.NaryHuffman method) ensure_dir() (in module neurotools.util.tools) enumerate_fast_colors() (in module neurotools.graphics.color) errmx() (in module neurotools.linalg.matrix) error_covariance() (in module neurotools.stats.shuffleL2explore) estimate_bias_in_uncorrected_ppc() (in module neurotools.spikes.ppc) estimate_padding() (in module neurotools.signal) estimateBlocks() (in module neurotools.obsolete.gpu.cu.device) estimateLoop() (in module neurotools.obsolete.gpu.cu.device) estimateThreadsPerBlock() (in module neurotools.obsolete.gpu.cu.device) eta (neurotools.stats.shuffleL2explore.AdaptiveShuffleResult attribute) euler_integrate_LIF() (in module neurotools.obsolete.models.lif)

eval_from_cached() (in module neurotools.jobs.parallel) execfile() (in module neurotools.util.system) exists() (in module neurotools.jobs.cache) (in module neurotools.util.tools) expand_axis_outward() (in module neurotools.graphics.plot) expand_axis_x() (in module neurotools.graphics.plot) expand_axis_y() (in module neurotools.graphics.plot) expand_y_range() (in module neurotools.graphics.plot) expected_intersection() (in module neurotools.stats.covalign) expected_intersection_enormed() (in module neurotools.stats.covalign) expected_intersection_enormed_chance() (in module neurotools.stats.covalign) expected_intersection_rank1() (in module neurotools.stats.covalign) explogpdf() (in module neurotools.stats.distributions) exponential() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) exponential_basis() (in module neurotools.spatial.kernels) exponential_decay() (in module neurotools.stats.regressions) exponential_integrate_LIF() (in module neurotools.obsolete.models.lif) exponential_moving_average() (in module neurotools.obsolete.models.lif) expsub() (in module neurotools.obsolete.gpu.cu.function) extend_mask() (in module neurotools.spatial.masking) extract() (in module neurotools.util.array) ezip() (in module neurotools.util.array) ezkern() (in module neurotools.obsolete.gpu.cu.function)

F

f() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) (in module neurotools.util.functions) f1() (in module neurotools.util.functions) f2() (in module neurotools.util.functions) factor_predict() (in module neurotools.stats) FailureError fancy() (in module neurotools.obsolete.gpu.cpu.util) fast_kde() (in module neurotools.stats.fastkde) fdiff() (in module neurotools.signal) fft_cwt() (in module neurotools.signal.morlet) fft_cwt_transposed() (in module neurotools.signal.morlet) fft_cwt_transposed_logspaced() (in module neurotools.signal.morlet) fft_upsample_2D() (in module neurotools.spatial.peaks) fftacorr1d() (in module neurotools.signal) fftppc() (in module neurotools.spikes.ppc) fftppc_biased() (in module neurotools.spikes.ppc) fftppc_biased_multitaper() (in module neurotools.spikes.ppc) fftppc_multitaper() (in module neurotools.spikes.ppc) fftsta() (in module neurotools.spikes.sta) figurebox() (in module neurotools.graphics.plot) file_string_to_signature() (in module neurotools.jobs.cache) find() (in module neurotools.util.array) find_all_extension() (in module neurotools.util.tools) find_critical_points() (in module neurotools.spatial.fftzeros) find_critical_potential_points() (in module neurotools.spatial.fftzeros) findpeaks() (in module neurotools.spatial.peaks) fit_vonmises() (in module neurotools.stats.circular) fitgaussbimodal() (in module neurotools.obsolete.gpu.cu.sequence)

fitgausstrimodal() (in module neurotools.obsolete.gpu.cu.sequence) fitGLM() (in module neurotools.stats.glm) fix_derivative() (in module neurotools.signal.phase) flat() (in module neurotools.obsolete.gpu.cpu.util) flatcov() (in module neurotools.linalg.operators) flathist() (in module neurotools.graphics.plot) floor_to_precision() (in module neurotools.graphics.plot) foo() (neurotools.stats.information.dirichlet_density class method) force_aspect() (in module neurotools.graphics.plot) format() (in module neurotools.obsolete.gpu.cl.function) (in module neurotools.obsolete.gpu.cu.function) forward_abstract() (in module neurotools.stats.hmm) forward_backward() (in module neurotools.stats.hmm) forward_backward_abstract() (in module neurotools.stats.hmm) fraction_explained_deviance() (in module neurotools.stats) FrameEater() (in module neurotools.obsolete.gpu.cu.sequence) from_hierarchical_columns() (in module neurotools.util.pandas) fsize() (in module neurotools.graphics.plot) ftwthr() (in module neurotools.util.getfftw) fudgex() (in module neurotools.graphics.plot) fudgexy() (in module neurotools.graphics.plot) fudgey() (in module neurotools.graphics.plot) function_fingerprint() (in module neurotools.jobs.parallel) function_hash_no_subroutines() (in module neurotools.jobs.cache) function_hash_with_subroutines() (in module neurotools.jobs.cache) function_signature() (in module neurotools.jobs.cache) fwd() (neurotools.stats.hmm.DiffusionGaussian method) (neurotools.stats.hmm.MVGOUUpdate method) (neurotools.stats.hmm.MVGUpdate method) (neurotools.stats.hmm.OUGaussian method)

G

g() (in module neurotools.util.functions) gamma() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) Gaussian (class in neurotools.stats.gaussian) gaussian1DblurOperator() (in module neurotools.linalg.operators) Gaussian2D_covellipse() (in module neurotools.graphics.plot) gaussian2DblurOperator() (in module neurotools.linalg.operators) gaussian_2D_kernel() (in module neurotools.spatial.kernels) gaussian_from_points() (in module neurotools.spatial.points) gaussian_function() (in module neurotools.stats.regressions) gaussian_kernel() (in module neurotools.signal) gaussian_logpdf() (in module neurotools.stats.distributions) gaussian_pdf() (in module neurotools.stats.distributions) gaussian_quadrature() (in module neurotools.stats.gaussian) gaussian_quadrature_logarithmic() (in module neurotools.stats.gaussian) gaussian_smooth() (in module neurotools.signal) GaussianCoxApproximator (class in neurotools.stats.hmm) GaussianCoxModel (class in neurotools.stats.hmm) gaussianize() (in module neurotools.signal) gausskern1d() (in module neurotools.signal.conv) gausskern2d() (in module neurotools.signal.conv) gentle_morlet_psd() (in module neurotools.signal.morlet) geometric() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) geometric_window() (in module neurotools.signal.morlet) get() (in module neurotools.util.pandas) get_aspect() (in module neurotools.graphics.plot) get_average_synchrony_length_constant_parallel() (in module neurotools.spatial.distance) get_averaged_angular_distance() (in module neurotools.spatial.distance) get_ax_pixel() (in module neurotools.graphics.plot) get_ax_pixel_ratio() (in module neurotools.graphics.plot) get_ax_size() (in module neurotools.graphics.plot) get_bbox() (in module neurotools.graphics.plot) get_cache_path() (in module neurotools.jobs.cache) get_critical_spectra() (in module neurotools.spatial.fftzeros) get_d2_samples() (neurotools.stats.regressions.CircregressResult method) get_depth() (in module neurotools.graphics.dendron) get_edges() (in module neurotools.signal) get_factor_analysis() (in module neurotools.stats) get_gentle_morlets_ft() (in module neurotools.signal.morlet) get_length_constant_trial() (in module neurotools.spatial.distance) get_mask() (in module neurotools.spatial.dct) get_mask_antialiased() (in module neurotools.spatial.dct) get_orthogonal_alignment() (in module neurotools.stats.covalign) get_pair_distance() (in module neurotools.spatial.distance) get_peak_density() (in module neurotools.spatial.peaks) get_phase_gradient_as_complex() (in module neurotools.spatial.fftzeros) get_R2_samples() (neurotools.stats.regressions.CircregressResult method) get_snips() (in module neurotools.spikes.sta) get_source() (in module neurotools.jobs.cache) get_state() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) get_subroutines() (in module neurotools.jobs.closure) get_theta_samples() (neurotools.stats.regressions.CircregressResult method) get_triggered_stats() (in module neurotools.spikes.sta) get_whiten() (in module neurotools.stats.shuffleL2explore) get_whitener() (in module neurotools.linalg.matrix) getdict() (in module neurotools.util.tools) getFWHM() (in module neurotools.spikes.waveform) getHDF() (in module neurotools.util.hdfmat) getHDFvalue() (in module neurotools.util.hdfmat) getp() (in module neurotools.spatial.fftzeros) getpeaks2d() (in module neurotools.spatial.fftzeros) getPHP() (in module neurotools.spikes.waveform) getPT() (in module neurotools.spikes.waveform) getPTHW() (in module neurotools.spikes.waveform) getPVT() (in module neurotools.spikes.waveform) getsize() (in module neurotools.util.tools) getVariable() (in module neurotools.util.tools) getWAHP() (in module neurotools.spikes.waveform) glmfit() (in module neurotools.stats) GLMPenaltyBernoulli() (in module neurotools.stats.glm) GLMPenaltyL2() (in module neurotools.stats.glm) GLMPenaltyPoisson() (in module neurotools.stats.glm) globalize() (in module neurotools.util.tools) good_colorbar() (in module neurotools.graphics.plot) gpu_histogram() (in module neurotools.obsolete.gpu.cu.statistics) gpuand() (in module neurotools.obsolete.gpu.cu.logic) GPUAutometric() (in module neurotools.obsolete.gpu.cu.sequence) gpubarlinedata() (in module neurotools.obsolete.gpu.cu.plot) (in module neurotools.obsolete.gpu.cu.statistics)

gpubin() (in module neurotools.obsolete.gpu.cu.function) (in module neurotools.obsolete.gpu.cu.statistics) gpubin_core() (in module neurotools.obsolete.gpu.cu.statistics) gpubinaryeq() (in module neurotools.obsolete.gpu.cu.function) gpuboxconv() (in module neurotools.obsolete.gpu.cu.convolution) gpuboxconv_core() (in module neurotools.obsolete.gpu.cu.convolution) gpucenter() (in module neurotools.obsolete.gpu.cu.statistics) gpucorr() (in module neurotools.obsolete.gpu.cu.statistics) gpucov() (in module neurotools.obsolete.gpu.cu.statistics) gpuderivative() (in module neurotools.obsolete.gpu.cu.sequence) GPUDotmetric() (in module neurotools.obsolete.gpu.cu.sequence) gpueq() (in module neurotools.obsolete.gpu.cu.logic) gpufloat() (in module neurotools.obsolete.gpu.cu.function) gpufloatmat() (in module neurotools.obsolete.gpu.cu.function) gpufloatred() (in module neurotools.obsolete.gpu.cu.function) gpugt() (in module neurotools.obsolete.gpu.cu.logic) gpugteq() (in module neurotools.obsolete.gpu.cu.logic) gpuhill() (in module neurotools.obsolete.gpu.cu.gpufun) gpuhistogram() (in module neurotools.obsolete.gpu.cu.plot) (in module neurotools.obsolete.gpu.cu.statistics) gpuhzero() (in module neurotools.obsolete.gpu.cu.logic) gpuint() (in module neurotools.obsolete.gpu.cu.function) gpuintmap() (in module neurotools.obsolete.gpu.cu.function) gpuintmat() (in module neurotools.obsolete.gpu.cu.function) gpuintred() (in module neurotools.obsolete.gpu.cu.function) gpulcomb() (in module neurotools.obsolete.gpu.cu.gpufun) gpulognpdf() (in module neurotools.obsolete.gpu.cu.sequence) gpulogpdf() (in module neurotools.obsolete.gpu.cu.gpufun) gpult() (in module neurotools.obsolete.gpu.cu.logic) gpulteq() (in module neurotools.obsolete.gpu.cu.logic) gpumag() (in module neurotools.obsolete.gpu.cu.statistics) GPUMagmetric() (in module neurotools.obsolete.gpu.cu.sequence) gpumap() (in module neurotools.obsolete.gpu.cl.function) (in module neurotools.obsolete.gpu.cu.function) gpumapeq() (in module neurotools.obsolete.gpu.cu.function) GPUMatrix (class in neurotools.obsolete.gpu.cl.matrix) (class in neurotools.obsolete.gpu.cu.matrix) gpumean() (in module neurotools.obsolete.gpu.cu.gpufun) (in module neurotools.obsolete.gpu.cu.statistics) gpuneq() (in module neurotools.obsolete.gpu.cu.logic) gpunor() (in module neurotools.obsolete.gpu.cu.logic) gpunot() (in module neurotools.obsolete.gpu.cu.logic) gpunpdf() (in module neurotools.obsolete.gpu.cu.gpufun) (in module neurotools.obsolete.gpu.cu.sequence) GPUPointAutoDistance() (in module neurotools.obsolete.gpu.cu.sequence) gpupointer() (in module neurotools.obsolete.gpu.cu.function) gpurandexp() (in module neurotools.obsolete.gpu.cu.gpufun) gpurandf() (in module neurotools.obsolete.gpu.cu.gpufun) gpurange() (in module neurotools.obsolete.gpu.cu.logic) gpuscalar() (in module neurotools.obsolete.gpu.cu.function) gpuscorr() (in module neurotools.obsolete.gpu.cu.statistics) gpuscov() (in module neurotools.obsolete.gpu.cu.statistics) gpusdv() (in module neurotools.obsolete.gpu.cu.statistics) gpusem() (in module neurotools.obsolete.gpu.cu.statistics) GPUSequenceAutoDetect() (in module neurotools.obsolete.gpu.cu.sequence) gpusmooth() (in module neurotools.obsolete.gpu.cu.sequence) gpusqdev() (in module neurotools.obsolete.gpu.cu.statistics) gpusqmag() (in module neurotools.obsolete.gpu.cu.statistics) gpusstd() (in module neurotools.obsolete.gpu.cu.statistics) gpustd() (in module neurotools.obsolete.gpu.cu.statistics) gpusubsetgfit() (in module neurotools.obsolete.gpu.cu.sequence) gpusubsetmean() (in module neurotools.obsolete.gpu.cu.sequence) gpusvar() (in module neurotools.obsolete.gpu.cu.statistics) gputhing() (in module neurotools.obsolete.gpu.cu.sequence) gputranspose() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) gpuuniform() (in module neurotools.obsolete.gpu.cu.gpufun) gpuvar() (in module neurotools.obsolete.gpu.cu.statistics) gpuyes() (in module neurotools.obsolete.gpu.cu.logic) gpuzscore() (in module neurotools.obsolete.gpu.cu.statistics) grad() (in module neurotools.spatial.fftzeros) gradientglmfit() (in module neurotools.stats.glm) grid_search() (in module neurotools.stats.gridsearch) gridhist() (in module neurotools.stats.density) group_error_covariance() (in module neurotools.stats.shuffleL2explore) group_moments() (in module neurotools.stats.shuffleL2explore) group_mse() (in module neurotools.stats.shuffleL2explore) group_R2_matrix() (in module neurotools.stats.shuffleL2explore) guessGPUType() (in module neurotools.obsolete.gpu.cl.function) (in module neurotools.obsolete.gpu.cu.function) gumbel() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore)

H

H() (neurotools.stats.information.dirichlet_density class method) (neurotools.stats.information.discrete class method) H_samples() (neurotools.stats.information.discrete class method) half_gaussian_function() (in module neurotools.stats.regressions) HandlerSquare (class in neurotools.graphics.plot) hashit() (in module neurotools.jobs.cache) hasNaN() (in module neurotools.stats.hmm) hcat() (in module neurotools.util.string) hcl2rgb() (in module neurotools.graphics.color) Hcond() (neurotools.stats.information.discrete class method) hdf2dict() (in module neurotools.util.hdfmat) height (neurotools.signal.PeakInfoResult attribute) hess() (in module neurotools.stats.shuffleL2explore) hessian_2D() (in module neurotools.spatial.peaks) hex2rgb() (in module neurotools.graphics.color)

hex_pack_BGR() (in module neurotools.graphics.color) hide_toolbar() (in module neurotools.graphics.matplotlib) hierarchical_cacher() (in module neurotools.jobs.cache) highpass_filter() (in module neurotools.signal) history() (in module neurotools.util.tools) hollow_polygon() (in module neurotools.graphics.plot) hsigbar() (in module neurotools.graphics.plot) hsv2rgb() (in module neurotools.graphics.color) hue_angle() (in module neurotools.graphics.color) Huffman (class in neurotools.obsolete.encoding.Huffman) Huffman.Leaf (class in neurotools.obsolete.encoding.Huffman) Huffman.Node (class in neurotools.obsolete.encoding.Huffman) human_decode() (in module neurotools.jobs.cache) human_encode() (in module neurotools.jobs.cache) hypergeometric() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore)

I

I() (neurotools.stats.information.dirichlet_density class method) (neurotools.stats.information.discrete class method) idivup() (in module neurotools.obsolete.gpu.cpu.util) ifreq() (in module neurotools.signal.phase) image_cov() (in module neurotools.stats.fastkde) in_hull() (in module neurotools.spatial.geometry) incolumns() (in module neurotools.util.string) index (neurotools.signal.PeakInfoResult attribute) inflection_above (neurotools.signal.PeakInfoResult attribute) inflection_below (neurotools.signal.PeakInfoResult attribute) inhibition_arrow() (in module neurotools.graphics.plot) initialize_caches() (in module neurotools.jobs.initialize_system_cache) inorder_traversal() (in module neurotools.graphics.dendron) insert_global() (in module neurotools.obsolete.gpu.cl.function) inspect_function_closure() (in module neurotools.jobs.closure) integrator() (in module neurotools.linalg.operators) interp_bin() (in module neurotools.spatial.spiking) interpmax1d() (in module neurotools.signal) interpolate_NaN() (in module neurotools.signal) interpolate_NaN_quadratic() (in module neurotools.signal)

interpolate_peaks() (in module neurotools.spatial.peaks) inversesigmoid() (in module neurotools.util.functions) invert_permutation() (in module neurotools.util.array) invert_uniformize() (in module neurotools.signal) is_dangerous_filename() (in module neurotools.jobs.filenames) is_empty_col() (in module neurotools.util.pandas) is_immutable() (in module neurotools.jobs.closure) is_probably_safe() (in module neurotools.jobs.closure) is_thin() (in module neurotools.spikes.waveform) is_thin_pvt() (in module neurotools.spikes.waveform) iscolumn() (in module neurotools.linalg.arguments) Ishuff() (neurotools.stats.information.discrete class method) isInt() (in module neurotools.util.string) isoluminance1() (in module neurotools.graphics.color) isoluminance2() (in module neurotools.graphics.color) isoluminance3() (in module neurotools.graphics.color) isoluminance4() (in module neurotools.graphics.color) isrow() (in module neurotools.linalg.arguments) issquare() (in module neurotools.linalg.arguments) iterated_upsample() (in module neurotools.spatial.dct) iterative_orthogonalize_basis() (in module neurotools.spatial.kernels)

J

joined (neurotools.stats.information.JointCategoricalDistribution attribute) joint() (in module neurotools.stats.information) joint_best_rho_gradient() (in module neurotools.stats.shuffleL2explore) joint_model() (neurotools.stats.information.dirichlet_density class method)

joint_phase_magnitude_plot() (in module neurotools.graphics.ztransform_plot_helpers) joint_reglstsq_MSE() (in module neurotools.stats.shuffleL2explore) JointCategoricalDistribution (class in neurotools.stats.information) jump() (in module neurotools.stats.hmm)

K

k (neurotools.stats.shuffleL2explore.AdaptiveShuffleResult attribute) kalman_backward() (in module neurotools.stats.kalman) kalman_forward() (in module neurotools.stats.kalman) kalman_measure() (in module neurotools.stats.kalman) kalman_smooth() (in module neurotools.stats.kalman) kdepeak() (in module neurotools.stats.density)

keeprank() (in module neurotools.stats.covalign) kept (neurotools.stats.information.JointCategoricalDistribution attribute) kernel() (in module neurotools.obsolete.gpu.cl.function) (in module neurotools.obsolete.gpu.cu.function) killSpikes() (in module neurotools.signal) knn_1d_density() (in module neurotools.stats.density) kronsum() (in module neurotools.linalg.matrix)

L

label() (in module neurotools.graphics.plot) label_complex_axes() (in module neurotools.graphics.ztransform_plot_helpers) lap() (in module neurotools.util.array) laplace() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) laplace_kernel() (in module neurotools.linalg.matrix) (in module neurotools.spatial.kernels) laplacian() (in module neurotools.spatial.kernels) laplacian1D() (in module neurotools.linalg.operators) laplacian1D_circular() (in module neurotools.linalg.operators) laplacian2D() (in module neurotools.linalg.operators) laplacianFT1D() (in module neurotools.linalg.operators) launch_cache_synchronizers() (in module neurotools.jobs.initialize_system_cache) ldif() (in module neurotools.obsolete.gpu.cpu.util) ldif2() (in module neurotools.obsolete.gpu.cpu.util) Ldistance() (in module neurotools.linalg.matrix) ldiv() (in module neurotools.linalg.matrix) (in module neurotools.obsolete.gpu.cpu.util) ldiv2() (in module neurotools.obsolete.gpu.cpu.util) leave_one_out() (in module neurotools.stats.shuffleL2explore) left_legend() (in module neurotools.graphics.plot) length() (in module neurotools.obsolete.gpu.cpu.util) lfit() (in module neurotools.stats.shuffleL2explore) lgcp_observation_minimizer() (in module neurotools.stats.hmm) lighten() (in module neurotools.graphics.color) (in module neurotools.graphics.plot) lighthues() (in module neurotools.graphics.color) lightness() (in module neurotools.graphics.color) limit_cores() (in module neurotools.jobs.parallel) linear_cosine_basis() (in module neurotools.signal) linear_regression_shuffle() (in module neurotools.stats.shuffleL2explore) linfilter() (in module neurotools.signal) linscale_polar_plot() (in module neurotools.graphics.plot) list_like() (in module neurotools.graphics.dendron) listit() (in module neurotools.jobs.ndecorator)

Llasso() (in module neurotools.linalg.matrix) lmap() (in module neurotools.util.array) lmul() (in module neurotools.obsolete.gpu.cpu.util) lmul2() (in module neurotools.obsolete.gpu.cpu.util) lnp() (neurotools.stats.information.dirichlet_density class method) local_maxima() (in module neurotools.signal) local_minima() (in module neurotools.signal) local_peak_within() (in module neurotools.signal) locate_cached() (in module neurotools.jobs.cache) log_cosine_basis() (in module neurotools.linalg.operators) (in module neurotools.spatial.kernels) (in module neurotools.stats.glm) log_factorial() (in module neurotools.util.functions) log_likelihood() (in module neurotools.stats.hmm) log_spline_basis() (in module neurotools.spatial.kernels) logdet() (in module neurotools.linalg.matrix) logfreqs() (in module neurotools.signal.morlet) LogGaussianCoxApproximator (class in neurotools.stats.hmm) LogGaussianCoxModel (class in neurotools.stats.hmm) logistic() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) logmode() (in module neurotools.stats.modefind) logmodeplot() (in module neurotools.stats.modefind) lognormal() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) logpdf() (neurotools.stats.gaussian.Gaussian method) logpolar_gaussian() (in module neurotools.stats.circular) logpolar_stats() (in module neurotools.stats.circular) logseries() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) lowpass_filter() (in module neurotools.signal) lpow() (in module neurotools.obsolete.gpu.cpu.util) lpow2() (in module neurotools.obsolete.gpu.cpu.util) lsum() (in module neurotools.obsolete.gpu.cpu.util) lsum2() (in module neurotools.obsolete.gpu.cpu.util) luminance_matrix() (in module neurotools.graphics.color)

M

m (neurotools.stats.gaussian.Gaussian attribute) magickernel() (in module neurotools.spatial.kernels) magicsharp() (in module neurotools.spatial.kernels) magnitudes() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) make_cosine_basis() (in module neurotools.linalg.operators) (in module neurotools.spatial.kernels) (in module neurotools.stats.glm) make_lagged() (in module neurotools.signal) make_rebroadcast_slice() (in module neurotools.util.array) mapdict() (in module neurotools.util.tools) mask_crop() (in module neurotools.spatial.masking) mask_to_points() (in module neurotools.spatial.masking) maskout() (in module neurotools.spatial.masking) mat5todict() (in module neurotools.util.hdfmat) match_covariance() (in module neurotools.linalg.matrix) match_image_aspect() (in module neurotools.graphics.plot) match_luminance() (in module neurotools.graphics.color) matkern() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) matlab() (in module neurotools.util.tools) matouter() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) matscalar() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) matstrip() (in module neurotools.util.hdfmat) matversion() (in module neurotools.util.hdfmat) maxeig() (in module neurotools.linalg.matrix) maybe_integer() (in module neurotools.util.array) mdif() (in module neurotools.obsolete.gpu.cpu.util) mdiv() (in module neurotools.obsolete.gpu.cpu.util) mean() (in module neurotools.obsolete.gpu.cpu.util) mean_block() (in module neurotools.signal) mean_center() (in module neurotools.graphics.image) mean_confidence_interval() (in module neurotools.stats) meanCenter() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) means() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) medhues() (in module neurotools.graphics.color) median_block() (in module neurotools.signal) median_center() (in module neurotools.graphics.image) median_filter() (in module neurotools.signal) memoize() (in module neurotools.jobs.ndecorator) mergeNearby() (in module neurotools.spatial.triangulation) metaloadmat() (in module neurotools.util.tools) minimize_retry() (in module neurotools.stats.minimize) minmax() (in module neurotools.stats) mintomax() (in module neurotools.signal) mirror2d() (in module neurotools.signal.conv) mirror2D() (in module neurotools.spatial.fftzeros) mirrored_gaussian_smooth() (in module neurotools.signal) missing() (in module neurotools.obsolete.gpu.cl) (in module neurotools.obsolete.gpu.cu.device) (in module neurotools.obsolete.gpu.cu.plot) mmap() (in module neurotools.obsolete.gpu.cpu.util) mmean() (in module neurotools.obsolete.gpu.cpu.util) mmul() (in module neurotools.obsolete.gpu.cpu.util) mock_legend() (in module neurotools.graphics.plot) modefind() (in module neurotools.stats.modefind) module neurotools neurotools.graphics neurotools.graphics.color neurotools.graphics.colormaps neurotools.graphics.dendron neurotools.graphics.fabio_maps neurotools.graphics.image neurotools.graphics.matplotlib neurotools.graphics.plot neurotools.graphics.pygame neurotools.graphics.ztransform_plot_helpers neurotools.jobs neurotools.jobs.cache neurotools.jobs.closure neurotools.jobs.filenames neurotools.jobs.initialize_system_cache neurotools.jobs.ndecorator neurotools.jobs.parallel neurotools.linalg neurotools.linalg.arguments neurotools.linalg.matrix neurotools.linalg.operators neurotools.nlab neurotools.obsolete neurotools.obsolete.encoding neurotools.obsolete.encoding.Huffman neurotools.obsolete.encoding.NaryHuffman neurotools.obsolete.gpu neurotools.obsolete.gpu.cl neurotools.obsolete.gpu.cl.device neurotools.obsolete.gpu.cl.function neurotools.obsolete.gpu.cl.matrix neurotools.obsolete.gpu.cpu neurotools.obsolete.gpu.cpu.util neurotools.obsolete.gpu.cu neurotools.obsolete.gpu.cu.convolution neurotools.obsolete.gpu.cu.device neurotools.obsolete.gpu.cu.function neurotools.obsolete.gpu.cu.gpufun neurotools.obsolete.gpu.cu.graph neurotools.obsolete.gpu.cu.logic neurotools.obsolete.gpu.cu.matrix neurotools.obsolete.gpu.cu.plot neurotools.obsolete.gpu.cu.sequence neurotools.obsolete.gpu.cu.statistics neurotools.obsolete.models neurotools.obsolete.models.izh neurotools.obsolete.models.lif neurotools.obsolete.opto neurotools.signal neurotools.signal.coherence neurotools.signal.conv neurotools.signal.morlet neurotools.signal.multitaper neurotools.signal.phase neurotools.signal.savitskygolay neurotools.signal.sde neurotools.spatial neurotools.spatial.array neurotools.spatial.dct neurotools.spatial.distance neurotools.spatial.fftzeros neurotools.spatial.geometry neurotools.spatial.kernels neurotools.spatial.masking neurotools.spatial.peaks neurotools.spatial.phase neurotools.spatial.points neurotools.spatial.spiking neurotools.spatial.triangulation neurotools.spikes neurotools.spikes.convolutional neurotools.spikes.ppc neurotools.spikes.sta neurotools.spikes.waveform neurotools.stats neurotools.stats.circular neurotools.stats.covalign neurotools.stats.density neurotools.stats.distributions neurotools.stats.fastkde neurotools.stats.gaussian neurotools.stats.glm neurotools.stats.gridsearch neurotools.stats.hmm neurotools.stats.information neurotools.stats.kalman neurotools.stats.mcint neurotools.stats.minimize neurotools.stats.mixtures neurotools.stats.modefind neurotools.stats.pvalues neurotools.stats.regressions neurotools.stats.shuffleL2explore neurotools.stats.tests neurotools.util neurotools.util.array neurotools.util.functions neurotools.util.getfftw neurotools.util.hdfmat neurotools.util.pandas neurotools.util.string neurotools.util.system neurotools.util.time neurotools.util.tools

monte_carlo_expectation() (in module neurotools.stats.mcint) monte_carlo_moments() (in module neurotools.stats.mcint) more_xticks() (in module neurotools.graphics.plot) more_yticks() (in module neurotools.graphics.plot) morlet_population_synchrony_spectrum() (in module neurotools.signal.coherence) mpow() (in module neurotools.obsolete.gpu.cpu.util) MSE() (in module neurotools.stats.shuffleL2explore) mstd() (in module neurotools.obsolete.gpu.cpu.util) msum() (in module neurotools.obsolete.gpu.cpu.util) mu (neurotools.stats.tests.WeightedTtestResult attribute) mu() (in module neurotools.obsolete.gpu.cpu.util) mulmag() (in module neurotools.obsolete.gpu.cu.sequence) multinomial() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) multiply_gaussian() (in module neurotools.stats.kalman) multitaper_coherence() (in module neurotools.signal.coherence) multitaper_multitrial_coherence() (in module neurotools.signal.coherence) multivariate_normal() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) mvar() (in module neurotools.obsolete.gpu.cpu.util) MVG_check() (in module neurotools.stats.gaussian) MVG_conditional() (in module neurotools.stats.gaussian) MVG_divide() (in module neurotools.stats.gaussian) MVG_DKL() (in module neurotools.stats.gaussian) MVG_DKL_CP() (in module neurotools.stats.gaussian) MVG_entropy() (in module neurotools.stats.gaussian) MVG_kalman() (in module neurotools.stats.gaussian) MVG_kalman_joint() (in module neurotools.stats.gaussian) MVG_kalman_joint_P() (in module neurotools.stats.gaussian) MVG_kalman_P_inverseA() (in module neurotools.stats.gaussian) MVG_logPDF() (in module neurotools.stats.gaussian) MVG_multiply() (in module neurotools.stats.gaussian) MVG_multiply_C() (in module neurotools.stats.gaussian) MVG_PDF() (in module neurotools.stats.gaussian) MVG_projection() (in module neurotools.stats.gaussian) MVG_sample() (in module neurotools.stats.gaussian) MVGaussian (class in neurotools.stats.hmm) MVGOUUpdate (class in neurotools.stats.hmm) MVGUpdate (class in neurotools.stats.hmm) MVLogGaussianCox (class in neurotools.stats.hmm) MVLogGaussianCox.MVPoissonApproximator (class in neurotools.stats.hmm)

N

n (neurotools.stats.shuffleL2explore.AdaptiveShuffleResult attribute) nan_mask() (in module neurotools.spatial.masking) nancorrect() (in module neurotools.stats.pvalues) nanrankdata() (in module neurotools.stats) NaryHuffman (class in neurotools.obsolete.encoding.NaryHuffman) NaryHuffman.Leaf (class in neurotools.obsolete.encoding.NaryHuffman) NaryHuffman.Node (class in neurotools.obsolete.encoding.NaryHuffman) ndargmax() (in module neurotools.util.array) ndarray_from_mat() (in module neurotools.util.pandas) nearPDHigham() (in module neurotools.linalg.matrix) nearPSDRebonatoJackel() (in module neurotools.linalg.matrix) negative_binomial() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) neumann_derivative_operator() (in module neurotools.linalg.operators) neurotools module neurotools.graphics module neurotools.graphics.color module neurotools.graphics.colormaps module neurotools.graphics.dendron module neurotools.graphics.fabio_maps module neurotools.graphics.image module neurotools.graphics.matplotlib module neurotools.graphics.plot module neurotools.graphics.pygame module neurotools.graphics.ztransform_plot_helpers module neurotools.jobs module neurotools.jobs.cache module neurotools.jobs.closure module neurotools.jobs.filenames module neurotools.jobs.initialize_system_cache module neurotools.jobs.ndecorator module neurotools.jobs.parallel module neurotools.linalg module neurotools.linalg.arguments module neurotools.linalg.matrix module neurotools.linalg.operators module neurotools.nlab module neurotools.obsolete module neurotools.obsolete.encoding module neurotools.obsolete.encoding.Huffman module neurotools.obsolete.encoding.NaryHuffman module neurotools.obsolete.gpu module neurotools.obsolete.gpu.cl module neurotools.obsolete.gpu.cl.device module neurotools.obsolete.gpu.cl.function module neurotools.obsolete.gpu.cl.matrix module neurotools.obsolete.gpu.cpu module neurotools.obsolete.gpu.cpu.util module neurotools.obsolete.gpu.cu module neurotools.obsolete.gpu.cu.convolution module neurotools.obsolete.gpu.cu.device module neurotools.obsolete.gpu.cu.function module neurotools.obsolete.gpu.cu.gpufun module neurotools.obsolete.gpu.cu.graph module neurotools.obsolete.gpu.cu.logic module neurotools.obsolete.gpu.cu.matrix module neurotools.obsolete.gpu.cu.plot module neurotools.obsolete.gpu.cu.sequence module neurotools.obsolete.gpu.cu.statistics module neurotools.obsolete.models module neurotools.obsolete.models.izh module neurotools.obsolete.models.lif module neurotools.obsolete.opto module neurotools.signal module neurotools.signal.coherence module neurotools.signal.conv module neurotools.signal.morlet module neurotools.signal.multitaper module neurotools.signal.phase module neurotools.signal.savitskygolay module neurotools.signal.sde module neurotools.spatial module neurotools.spatial.array module neurotools.spatial.dct module neurotools.spatial.distance module

neurotools.spatial.fftzeros module neurotools.spatial.geometry module neurotools.spatial.kernels module neurotools.spatial.masking module neurotools.spatial.peaks module neurotools.spatial.phase module neurotools.spatial.points module neurotools.spatial.spiking module neurotools.spatial.triangulation module neurotools.spikes module neurotools.spikes.convolutional module neurotools.spikes.ppc module neurotools.spikes.sta module neurotools.spikes.waveform module neurotools.stats module neurotools.stats.circular module neurotools.stats.covalign module neurotools.stats.density module neurotools.stats.distributions module neurotools.stats.fastkde module neurotools.stats.gaussian module neurotools.stats.glm module neurotools.stats.gridsearch module neurotools.stats.hmm module neurotools.stats.information module neurotools.stats.kalman module neurotools.stats.mcint module neurotools.stats.minimize module neurotools.stats.mixtures module neurotools.stats.modefind module neurotools.stats.pvalues module neurotools.stats.regressions module neurotools.stats.shuffleL2explore module neurotools.stats.tests module neurotools.util module neurotools.util.array module neurotools.util.functions module neurotools.util.getfftw module neurotools.util.hdfmat module neurotools.util.pandas module neurotools.util.string module neurotools.util.system module neurotools.util.time module neurotools.util.tools module new_alignment_normalized() (in module neurotools.stats.covalign) nice_interp() (in module neurotools.signal) nice_legend() (in module neurotools.graphics.plot) nicebp() (in module neurotools.graphics.plot) nicetable() (in module neurotools.util.string) nicex() (in module neurotools.graphics.plot) nicexy() (in module neurotools.graphics.plot) nicey() (in module neurotools.graphics.plot) noaxis() (in module neurotools.graphics.plot) noclip() (in module neurotools.graphics.plot) nolabels() (in module neurotools.graphics.plot) noncentral_chisquare() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) noncentral_f() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) nonnegative_bandpass_filter() (in module neurotools.signal) norm() (in module neurotools.obsolete.gpu.cpu.util) normal() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) normalize() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) (in module neurotools.signal) normalized_morlet() (in module neurotools.signal.morlet) normalized_waveform() (in module neurotools.spikes.waveform) normedcovariance() (in module neurotools.linalg.matrix) notick() (in module neurotools.graphics.plot) now() (in module neurotools.util.time) nowarn() (in module neurotools.util.tools) nox() (in module neurotools.graphics.plot) noxlabels() (in module neurotools.graphics.plot) noxyaxes() (in module neurotools.graphics.plot) noy() (in module neurotools.graphics.plot) noylabels() (in module neurotools.graphics.plot) npdf() (in module neurotools.util.functions) nrmse() (in module neurotools.stats) nstate (neurotools.stats.information.JointCategoricalDistribution attribute) nudge_axis_baseline() (in module neurotools.graphics.plot) nudge_axis_down() (in module neurotools.graphics.plot) nudge_axis_left() (in module neurotools.graphics.plot) nudge_axis_right() (in module neurotools.graphics.plot) nudge_axis_top() (in module neurotools.graphics.plot) nudge_axis_up() (in module neurotools.graphics.plot) nudge_axis_x() (in module neurotools.graphics.plot) nudge_axis_y() (in module neurotools.graphics.plot) nudge_axis_y_pixels() (in module neurotools.graphics.plot) numeric_grad() (in module neurotools.stats.glm) numeric_hess() (in module neurotools.stats.glm)

O

okwarn() (in module neurotools.util.tools) onehot() (in module neurotools.util.array) oneslike() (in module neurotools.util.array) opto_get_all_lfp_analytic_quick() (in module neurotools.obsolete.opto) opto_get_all_lfp_analytic_quick_parallel() (in module neurotools.obsolete.opto) opto_get_all_lfp_quick() (in module neurotools.obsolete.opto) opto_get_events_passive() (in module neurotools.obsolete.opto) opto_get_Fs() (in module neurotools.obsolete.opto) opto_get_laser() (in module neurotools.obsolete.opto)

opto_get_lfp() (in module neurotools.obsolete.opto) opto_get_lfp_analytic() (in module neurotools.obsolete.opto) opto_get_lfp_filtered() (in module neurotools.obsolete.opto) opto_get_map() (in module neurotools.obsolete.opto) orthnormedcovariance() (in module neurotools.stats.covalign) oucov() (in module neurotools.linalg.operators) OUGaussian (class in neurotools.stats.hmm) outer_complex() (in module neurotools.spatial.dct) outliers() (in module neurotools.stats) outputlimiter() (in module neurotools.util.time)

P

p() (neurotools.stats.information.dirichlet_density class method) p2c() (in module neurotools.spatial.points) (in module neurotools.util.tools) p2z() (in module neurotools.spatial.geometry) pack_array_data() (in module neurotools.spatial.array) pack_cross_correlation_matrix() (in module neurotools.spikes) pad1up() (in module neurotools.linalg.operators) padin() (in module neurotools.signal) padout() (in module neurotools.signal) pair_neighbors() (in module neurotools.spatial.points) paired_distances() (in module neurotools.spatial.points) pairwise_phase_consistancy() (in module neurotools.spikes.ppc) parallel_cached_wrapper() (in module neurotools.jobs.parallel) parallel_error_handling() (in module neurotools.jobs.parallel) parallel_indirect_wrapper() (in module neurotools.jobs.parallel) pararraymap() (in module neurotools.jobs.parallel) parcontext() (in module neurotools.jobs.parallel) pareto() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) parimap() (in module neurotools.jobs.parallel) parmap() (in module neurotools.jobs.parallel) parmap_dict() (in module neurotools.jobs.parallel) partition_data() (in module neurotools.stats) partition_data_for_crossvalidation() (in module neurotools.stats) partition_trials_for_crossvalidation() (in module neurotools.stats) pca() (in module neurotools.stats) pdiff() (in module neurotools.signal.phase) peak_fwhm() (in module neurotools.signal) peak_within() (in module neurotools.signal) peakfinder5() (in module neurotools.stats.modefind) PeakInfoResult (class in neurotools.signal) percent() (in module neurotools.util.string) percentile_filter() (in module neurotools.signal) permutation() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) pghilbert() (in module neurotools.signal.phase) pgrid() (in module neurotools.spatial.masking) phase_magnitude_figure() (in module neurotools.graphics.ztransform_plot_helpers) phase_randomize() (in module neurotools.signal.phase) (in module neurotools.spikes.ppc) phase_randomize_from_amplitudes() (in module neurotools.signal.phase) phase_randomized_bias_correction() (in module neurotools.spikes.ppc) phase_rotate() (in module neurotools.signal.phase) pieces() (in module neurotools.signal) pike() (in module neurotools.graphics.plot) piper (class in neurotools.util.tools) pixels_to_xfigureunits() (in module neurotools.graphics.plot) pixels_to_xunits() (in module neurotools.graphics.plot) pixels_to_yfigureunits() (in module neurotools.graphics.plot) pixels_to_yunits() (in module neurotools.graphics.plot) plnp() (neurotools.stats.information.dirichlet_density class method) plot_brackets() (in module neurotools.graphics.dendron) plot_brackets_polar() (in module neurotools.graphics.dendron) plot_circular_histogram() (in module neurotools.graphics.plot) plot_complex() (in module neurotools.graphics.plot) plot_critical_points() (in module neurotools.spatial.fftzeros) plot_critical_spectra() (in module neurotools.spatial.fftzeros) plot_edges() (in module neurotools.spatial.triangulation) plot_phase_direction() (in module neurotools.spatial.fftzeros) plot_phase_gradient() (in module neurotools.spatial.fftzeros) plot_quadrant() (in module neurotools.graphics.plot) plot_triangles() (in module neurotools.spatial.triangulation) plotCWT() (in module neurotools.graphics.plot) plotWTPhase() (in module neurotools.graphics.plot) plotWTPhaseFig() (in module neurotools.graphics.plot)

plotz() (in module neurotools.graphics.plot) poisson() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) poisson_baum_welch() (in module neurotools.stats.hmm) poisson_entropy_nats() (in module neurotools.stats.information) poisson_logpdf() (in module neurotools.stats.distributions) poisson_parameter_guess() (in module neurotools.stats.hmm) poisson_pdf() (in module neurotools.stats.distributions) poisson_viterbi_state_infer() (in module neurotools.stats.hmm) PoissonObservationApproximator (class in neurotools.stats.hmm) PoissonObservationModel (class in neurotools.stats.hmm) polar_smooth_contour() (in module neurotools.spatial.geometry) population_average_amplitude() (in module neurotools.spatial.phase) population_coherence() (in module neurotools.signal.multitaper) population_coherence_matrix() (in module neurotools.signal.coherence) population_eigencoherence() (in module neurotools.signal.coherence) (in module neurotools.signal.multitaper) population_kuramoto() (in module neurotools.spatial.phase) population_median_frequency() (in module neurotools.spatial.phase) population_median_phase_velocity() (in module neurotools.spatial.phase) population_normalized_sliding_signal_coherence() (in module neurotools.spatial.phase) population_phase_coherence() (in module neurotools.spatial.phase) population_phase_relative_sliding_kuramoto() (in module neurotools.spatial.phase) population_polar_std() (in module neurotools.spatial.phase) population_signal_amplitude_dispersion() (in module neurotools.spatial.phase) population_signal_amplitude_precision() (in module neurotools.spatial.phase) population_signal_amplitude_std() (in module neurotools.spatial.phase) population_signal_concentration() (in module neurotools.spatial.phase) population_signal_description() (in module neurotools.spatial.phase) population_signal_dispersion() (in module neurotools.spatial.phase) population_signal_phase_dispersion() (in module neurotools.spatial.phase) population_signal_phase_precision() (in module neurotools.spatial.phase) population_signal_phase_std() (in module neurotools.spatial.phase) population_signal_precision() (in module neurotools.spatial.phase) population_sliding_signal_coherence() (in module neurotools.spatial.phase) population_synchrony() (in module neurotools.spatial.phase) population_synchrony_linear() (in module neurotools.spatial.phase) population_synchrony_spectrum() (in module neurotools.signal.morlet) positivex() (in module neurotools.graphics.plot) positivexy() (in module neurotools.graphics.plot) positivey() (in module neurotools.graphics.plot) power() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) power_law() (in module neurotools.stats.regressions) pp_xcorr() (in module neurotools.spikes) ppc_chance_level() (in module neurotools.spikes.ppc) ppc_phase_randomize_chance_level_sample() (in module neurotools.spikes.ppc) ppglmfit() (in module neurotools.stats.glm) predict_latent() (in module neurotools.stats) prepare_wavelet_fft_basis() (in module neurotools.signal.morlet) prepare_wavelet_fft_basis_logspace() (in module neurotools.signal.morlet) print_signature() (in module neurotools.jobs.ndecorator) print_stats() (in module neurotools.stats) printKernel() (in module neurotools.obsolete.gpu.cl.function) (in module neurotools.obsolete.gpu.cu.function) printmatHDF5() (in module neurotools.util.hdfmat) process() (in module neurotools.spikes.waveform) project_factors() (in module neurotools.stats) psd_eig() (in module neurotools.linalg.matrix) purge_ram_cache() (in module neurotools.jobs.initialize_system_cache) purge_ssd_cache() (in module neurotools.jobs.initialize_system_cache) pvalue (neurotools.stats.shuffleL2explore.AdaptiveShuffleResult attribute) (neurotools.stats.tests.WeightedTtestResult attribute) (neurotools.stats.tests.ZTestResult attribute) px2x() (in module neurotools.graphics.plot) px2y() (in module neurotools.graphics.plot)

Q

qf() (in module neurotools.linalg.matrix) qfit (neurotools.signal.PeakInfoResult attribute) quadrant_axes() (in module neurotools.graphics.plot)

quadratic_peakinfo() (in module neurotools.signal) query_yes_no() (in module neurotools.util.system) quickgrad() (in module neurotools.spatial.fftzeros)

R

r2 (neurotools.stats.shuffleL2explore.AdaptiveShuffleResult attribute) radl2rgb() (in module neurotools.graphics.color) radl2rgbLUT() (in module neurotools.graphics.color) rand() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) randband() (in module neurotools.signal.phase) randint() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) randn() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) random() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) random_integers() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) random_point_sheet() (in module neurotools.obsolete.gpu.cu.graph) random_sample() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) rangeover() (in module neurotools.graphics.plot) rangeto() (in module neurotools.graphics.plot) rayleigh() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) rcond() (in module neurotools.linalg.matrix) rdiv() (in module neurotools.linalg.matrix) read_cache_entry() (in module neurotools.jobs.cache) read_mat() (in module neurotools.util.pandas) real_eig() (in module neurotools.linalg.matrix) realign() (in module neurotools.spikes.waveform) rebuild_unit_quality_caches() (in module neurotools.stats.covalign) reconstruct() (in module neurotools.spikes.convolutional) recursive_printmatHDF5() (in module neurotools.util.hdfmat) redundancy() (neurotools.stats.information.dirichlet_density class method) reflect2D() (in module neurotools.signal.conv) reflect2D_1() (in module neurotools.signal.conv) register_phasor_map() (in module neurotools.graphics.colormaps)

reglstq_moments() (in module neurotools.stats.shuffleL2explore) reglstq_xy() (in module neurotools.stats.shuffleL2explore) reglstsq() (in module neurotools.linalg.matrix) reglstsq_MSE() (in module neurotools.stats.shuffleL2explore) regroup() (in module neurotools.stats.shuffleL2explore) regsweep_MSE() (in module neurotools.stats.shuffleL2explore) regsweep_r2() (in module neurotools.stats.shuffleL2explore) reject_outliers() (in module neurotools.stats) remove_gaps() (in module neurotools.signal) remove_nans() (in module neurotools.util.array) remove_nonincreasing() (in module neurotools.util.array) remove_short() (in module neurotools.signal) resample_convex_hull() (in module neurotools.spatial.geometry) reset_pool() (in module neurotools.jobs.parallel) reset_ramdisk() (in module neurotools.jobs.initialize_system_cache) reslice() (in module neurotools.util.array) restore_limits() (in module neurotools.graphics.plot) restoreContext() (in module neurotools.util.tools) rewrap() (in module neurotools.signal.phase) rgb2hex() (in module neurotools.graphics.color) RGBtoHCL() (in module neurotools.graphics.color) right_legend() (in module neurotools.graphics.plot) rightaxis() (in module neurotools.graphics.plot) righty() (in module neurotools.graphics.plot) rmatrix() (in module neurotools.linalg.matrix) rnorm() (in module neurotools.obsolete.gpu.cpu.util) robust_line() (in module neurotools.stats.regressions) rotate() (in module neurotools.graphics.color) round_to_precision() (in module neurotools.graphics.plot) roundx() (in module neurotools.graphics.plot) roundy() (in module neurotools.graphics.plot) row() (in module neurotools.linalg.matrix) rsolt() (in module neurotools.linalg.matrix) rsolve() (in module neurotools.linalg.matrix)

S

s (neurotools.stats.tests.WeightedTtestResult attribute) sample() (in module neurotools.stats.hmm) sample_alignment_angle() (in module neurotools.stats.covalign) sample_alignment_angle_normalized() (in module neurotools.stats.covalign) sample_alignment_angle_unnormalized() (in module neurotools.stats.covalign) sample_alignment_complement() (in module neurotools.stats.covalign) sample_alignment_complement_normalized() (in module neurotools.stats.covalign) sample_alignment_cross() (in module neurotools.stats.covalign) sample_alignment_cross_normalized() (in module neurotools.stats.covalign) sample_alignment_self() (in module neurotools.stats.covalign) sample_alignment_self_normalized() (in module neurotools.stats.covalign) sample_alignment_self_unnormalized() (in module neurotools.stats.covalign) sample_alignment_self_unnormalized_nounit() (in module neurotools.stats.covalign) sample_categorical() (in module neurotools.stats.distributions) sample_ou_process() (in module neurotools.signal.sde) sample_wiener_process() (in module neurotools.signal.sde) samplevariances() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) sanitize() (in module neurotools.jobs.ndecorator) save_limits() (in module neurotools.graphics.plot) saveContext() (in module neurotools.util.tools) savefigure() (in module neurotools.graphics.plot) scalar() (in module neurotools.linalg.arguments) scale() (in module neurotools.obsolete.gpu.cpu.util) scan_cachedir() (in module neurotools.jobs.cache) scov() (in module neurotools.stats.shuffleL2explore) sdbarline() (in module neurotools.obsolete.gpu.cu.statistics) sdbarline2() (in module neurotools.obsolete.gpu.cu.statistics) sdgpubarlinedata() (in module neurotools.obsolete.gpu.cu.statistics) sebarline() (in module neurotools.obsolete.gpu.cu.plot) (in module neurotools.obsolete.gpu.cu.statistics) sebarline2() (in module neurotools.obsolete.gpu.cu.plot) (in module neurotools.obsolete.gpu.cu.statistics) selector_matrix() (in module neurotools.linalg.matrix) sem (neurotools.stats.tests.WeightedTtestResult attribute) sem() (in module neurotools.obsolete.gpu.cpu.util) separable2d() (in module neurotools.signal.conv) separable_guassian_blur() (in module neurotools.linalg.operators) set_edges() (in module neurotools.signal) set_state() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) setinrange() (in module neurotools.util.tools) sexp() (in module neurotools.stats.glm) (in module neurotools.util.functions) SGaccelerate() (in module neurotools.signal.savitskygolay) SGdifferentiate() (in module neurotools.signal.savitskygolay) SGfilt() (in module neurotools.signal.savitskygolay) SGfiltA() (in module neurotools.signal.savitskygolay) SGfiltJ() (in module neurotools.signal.savitskygolay) SGfiltV() (in module neurotools.signal.savitskygolay) SGjerk() (in module neurotools.signal.savitskygolay) SGKern() (in module neurotools.signal.savitskygolay) SGKernA() (in module neurotools.signal.savitskygolay) SGKernJ() (in module neurotools.signal.savitskygolay) SGKernV() (in module neurotools.signal.savitskygolay) SGOrd() (in module neurotools.signal.savitskygolay) SGsmooth() (in module neurotools.signal.savitskygolay) shade_edges() (in module neurotools.graphics.plot) shellmean() (in module neurotools.graphics.plot) shellplot() (in module neurotools.graphics.plot) shift() (in module neurotools.obsolete.gpu.cpu.util) short() (neurotools.stats.Description method) shortscientific() (in module neurotools.util.string) show_complete_fast_pallet() (in module neurotools.graphics.color) show_complete_fastest_pallet() (in module neurotools.graphics.color) show_fast_pallet() (in module neurotools.graphics.color) show_hex_pallet() (in module neurotools.graphics.color)

shuffle() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) (neurotools.stats.information.discrete class method) shuffle_variable() (in module neurotools.stats.shuffleL2explore) sigbar() (in module neurotools.graphics.plot) sigma() (in module neurotools.obsolete.gpu.cpu.util) sigmoid() (in module neurotools.stats.glm) (in module neurotools.util.functions) sign_preserving_amplitude_demodulate() (in module neurotools.signal.phase) signature_to_file_string() (in module neurotools.jobs.cache) sim_izh() (in module neurotools.obsolete.models.izh) simple_arrow() (in module neurotools.graphics.plot) simpleaxis() (in module neurotools.graphics.plot) simpleraxis() (in module neurotools.graphics.plot) simplerright() (in module neurotools.graphics.plot) simplestem() (in module neurotools.graphics.plot) sliding_multitaper_coherence() (in module neurotools.signal.coherence) sliding_multitaper_coherence_parallel() (in module neurotools.signal.coherence) sliding_population_signal_coherence() (in module neurotools.spatial.phase) slist() (in module neurotools.util.array) slog() (in module neurotools.util.functions) sls() (in module neurotools.util.array) snake_to_camel() (in module neurotools.util.string) snakecase_columns() (in module neurotools.util.pandas) solt() (in module neurotools.linalg.matrix) spaced_derivative() (in module neurotools.signal) spaced_derivative_operator() (in module neurotools.linalg.operators) span() (in module neurotools.signal) spectreconstruct() (in module neurotools.spikes.convolutional) spectrum() (in module neurotools.signal.multitaper) spherepoints() (in module neurotools.obsolete.gpu.cu.graph) spike_lfp_filters() (in module neurotools.spikes.convolutional) split_into_groups() (in module neurotools.util.array) splitz() (in module neurotools.graphics.plot) sprinkle() (in module neurotools.obsolete.gpu.cu.statistics) square_compare() (in module neurotools.graphics.plot) squared_first_circular_moment() (in module neurotools.stats.circular) sstd() (in module neurotools.obsolete.gpu.cpu.util) sstds() (in module neurotools.obsolete.gpu.cl.matrix) sta() (in module neurotools.spikes.convolutional) standard_cauchy() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) standard_exponential() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) standard_gamma() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) standard_normal() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) standard_t() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) start() (in module neurotools.graphics.matplotlib) (in module neurotools.graphics.pygame) states (neurotools.stats.information.JointCategoricalDistribution attribute) stats_block() (in module neurotools.signal) std() (in module neurotools.obsolete.gpu.cpu.util) stderrplot() (in module neurotools.graphics.plot) stds() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) subfigurelabel() (in module neurotools.graphics.plot) summag() (in module neurotools.obsolete.gpu.cu.sequence) summarize_function() (in module neurotools.jobs.ndecorator) sums() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) svar() (in module neurotools.obsolete.gpu.cpu.util) syn() (neurotools.stats.information.discrete class method) syn2() (neurotools.stats.information.discrete class method) synchrony_length_constant_areas_summary() (in module neurotools.spatial.distance)

T

t (neurotools.stats.gaussian.Gaussian attribute) (neurotools.stats.tests.WeightedTtestResult attribute) terminated_derivative_operator() (in module neurotools.linalg.operators) test_colormaps() (in module neurotools.graphics.colormaps) tic() (in module neurotools.util.time) timed() (in module neurotools.jobs.ndecorator) times_to_raster() (in module neurotools.spikes) to_image() (in module neurotools.spatial.masking) to_indices() (in module neurotools.util.array) to_mat() (in module neurotools.util.pandas) to_ndarray() (in module neurotools.util.pandas) to_xypoint() (in module neurotools.spatial.points) toc() (in module neurotools.util.time) today() (in module neurotools.util.time) toGPUType() (in module neurotools.obsolete.gpu.cl.function) (in module neurotools.obsolete.gpu.cu.function) TolerantDict (class in neurotools.util.tools) top_legend() (in module neurotools.graphics.plot) top_v() (in module neurotools.linalg.matrix) topercentiles() (in module neurotools.signal) transpose() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix) trendline() (in module neurotools.graphics.plot)

trial_crossvalidated_least_squares() (in module neurotools.stats) trianglesToEdges() (in module neurotools.spatial.triangulation) triangular() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) triggered_average() (in module neurotools.spikes.sta) tril_elements() (in module neurotools.linalg.matrix) trim_array() (in module neurotools.spatial.array) trim_array_as_if() (in module neurotools.spatial.array) trim_mask() (in module neurotools.spatial.masking) triu_elements() (in module neurotools.linalg.matrix) trough_above (neurotools.signal.PeakInfoResult attribute) trough_below (neurotools.signal.PeakInfoResult attribute) truncated_derivative() (in module neurotools.linalg.operators) truncated_derivative_operator() (in module neurotools.linalg.operators) TruncatedLogGaussianCoxApproximator (class in neurotools.stats.hmm) TruncatedLogGaussianCoxModel (class in neurotools.stats.hmm) TruncatedPoissonObservationApproximator (class in neurotools.stats.hmm) TruncatedPoissonObservationModel (class in neurotools.stats.hmm) tuple_to_bit16() (in module neurotools.graphics.color) tuple_to_bit24() (in module neurotools.graphics.color) tupleit() (in module neurotools.jobs.ndecorator) two_class_poisson_mixture_model() (in module neurotools.stats.mixtures) two_tailed_sampled_test() (in module neurotools.stats.tests) txcorr() (in module neurotools.spikes)

U

ungroup() (in module neurotools.stats.shuffleL2explore) uniform() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) uniform_point_sheet() (in module neurotools.obsolete.gpu.cu.graph) uniformize() (in module neurotools.signal) uniquerow() (in module neurotools.spatial.triangulation) unit_crosshairs() (in module neurotools.graphics.plot) unit_length() (in module neurotools.signal) unitaxes() (in module neurotools.graphics.plot)

unitize() (in module neurotools.graphics.image) unitscale() (in module neurotools.signal) unitsum() (in module neurotools.signal) unitx() (in module neurotools.graphics.plot) unity() (in module neurotools.graphics.plot) unwrap() (in module neurotools.jobs.ndecorator) (in module neurotools.signal.phase) unwrapped_angle() (in module neurotools.signal.phase) update_izh() (in module neurotools.obsolete.models.izh) upsample() (in module neurotools.signal)

V

v2str() (in module neurotools.util.string) v2str_long() (in module neurotools.util.string) validate_argument_signature() (in module neurotools.jobs.filenames) validate_for_matfile() (in module neurotools.jobs.cache) validate_for_numpy() (in module neurotools.jobs.cache) var() (in module neurotools.obsolete.gpu.cpu.util) var_block() (in module neurotools.signal) varexists() (in module neurotools.util.tools) variance_filter() (in module neurotools.signal) variances() (in module neurotools.obsolete.gpu.cl.matrix) (in module neurotools.obsolete.gpu.cu.matrix)

verify_axes() (in module neurotools.util.array) verify_function_closure() (in module neurotools.jobs.closure) virtual_reference_line_noise_removal() (in module neurotools.signal) visualize_derivatives() (in module neurotools.graphics.image) viterbi() (in module neurotools.stats.hmm) viterbi_log() (in module neurotools.stats.hmm) vonmises() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) vonmises_ring() (in module neurotools.graphics.plot) vpaired_histogram() (in module neurotools.graphics.plot) vtwin() (in module neurotools.graphics.plot) vunique (neurotools.stats.shuffleL2explore.AdaptiveShuffleResult attribute)

W

wait() (in module neurotools.util.tools) waitfor() (in module neurotools.util.time) wald() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) walk() (neurotools.obsolete.encoding.Huffman.Huffman.Node method) (neurotools.obsolete.encoding.NaryHuffman.NaryHuffman.Node method) warn() (in module neurotools.util.tools) weibull() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) weighted_avg_and_std() (in module neurotools.stats) weighted_least_squares() (in module neurotools.stats.regressions)

weighted_ttest_1samp() (in module neurotools.stats.tests) WeightedTtestResult (class in neurotools.stats.tests) wheremax() (in module neurotools.linalg.matrix) wheremin() (in module neurotools.linalg.matrix) widths_to_centers() (in module neurotools.util.array) widths_to_edges() (in module neurotools.util.array) widths_to_limits() (in module neurotools.util.array) wienerFT1D() (in module neurotools.linalg.operators) wordwrap() (in module neurotools.util.string) wrapped_circular_linear_error() (in module neurotools.stats.circular) wtpshow() (in module neurotools.graphics.plot)

X

xbartext() (in module neurotools.graphics.plot) xfigureunits_to_pixels() (in module neurotools.graphics.plot) xin() (in module neurotools.graphics.plot) xscalebar() (in module neurotools.graphics.plot)

xticklen() (in module neurotools.graphics.plot) xtickpad() (in module neurotools.graphics.plot) xunits_to_pixels() (in module neurotools.graphics.plot) xy_moments() (in module neurotools.stats.shuffleL2explore) xylim() (in module neurotools.graphics.plot)

Y

yank() (in module neurotools.util.tools) ybartext() (in module neurotools.graphics.plot) yfigureunits_to_pixels() (in module neurotools.graphics.plot) yin() (in module neurotools.graphics.plot)

yscalebar() (in module neurotools.graphics.plot) yticklen() (in module neurotools.graphics.plot) ytickpad() (in module neurotools.graphics.plot) yunits_to_pixels() (in module neurotools.graphics.plot)

Z

z (neurotools.stats.tests.ZTestResult attribute) z2p() (in module neurotools.spatial.geometry) z2xy() (in module neurotools.spatial.triangulation) zerohline() (in module neurotools.graphics.plot) zeromean() (in module neurotools.signal) zeromedian() (in module neurotools.signal) zeros_float() (in module neurotools.obsolete.gpu.cl.device) zeroslike() (in module neurotools.util.array)

zerovline() (in module neurotools.graphics.plot) zgrid() (in module neurotools.signal) zipf() (in module neurotools.nlab) (in module neurotools.stats.shuffleL2explore) zoombox() (in module neurotools.graphics.plot) zscore() (in module neurotools.signal) ztest_from_moments() (in module neurotools.stats.tests) ZTestResult (class in neurotools.stats.tests)