neurotools.spatial package

Submodules

• neurotools.spatial.array module
  • array_average_amplitude()
  • array_kuramoto()
  • array_synchrony()
  • array_kuramoto_standard_deviation()
  • array_synchrony_standard_deviation()
  • array_phase_gradient()
  • array_count_centers()
  • array_count_critical()
  • array_phasegradient_local()
  • array_phasegradient_planar()
  • array_phasegradient_magnitude_sigma()
  • array_phasegradient_magnitude_cv()
  • array_phasegradient_pgd_threshold()
  • array_wavelength_pgd_threshold()
  • array_wavelength_local_pgd_threshold()
  • array_speed_pgd_threshold()
  • array_speed_local()
  • array_wavelength_local()
  • array_wavelength_planar()
  • array_synchrony_pgd()
  • array_synchrony_pgd_standard_deviation()
  • array_kuramoto_pgd()
  • array_kuramoto_pgd_standard_deviation()
  • trim_array()
  • trim_array_as_if()
  • pack_array_data()
• neurotools.spatial.dct module
  • get_mask_antialiased()
  • get_mask()
  • dct_cut()
  • outer_complex()
  • dct_cut_antialias()
  • dct_cut_downsampled()
  • dct_upsample()
  • iterated_upsample()
  • dct_upsample_notrim()
• neurotools.spatial.distance module
  • get_pair_distance()
  • distance_angular_deviation()
  • get_averaged_angular_distance()
  • get_length_constant_trial()
  • get_average_synchrony_length_constant_parallel()
  • synchrony_length_constant_areas_summary()
• neurotools.spatial.fftzeros module
  • plot_phase_gradient()
  • plot_phase_direction()
  • dPhidx()
  • dPhidy()
  • get_phase_gradient_as_complex()
  • getpeaks2d()
  • coalesce()
  • coalesce_points()
  • find_critical_points()
  • plot_critical_points()
  • find_critical_potential_points()
  • grad()
  • quickgrad()
  • getp()
  • get_critical_spectra()
  • plot_critical_spectra()
  • cut_array_data()
  • mirror2D()
• neurotools.spatial.geometry module
  • p2z()
  • z2p()
  • polar_smooth_contour()
  • convex_hull()
  • convex_hull_from_mask()
  • resample_convex_hull()
  • in_hull()
• neurotools.spatial.kernels module
  • laplace_kernel()
  • laplacian()
  • gaussian_2D_kernel()
  • absorbing_gaussian()
  • absorbing_laplacian()
  • magicsharp()
  • magickernel()
  • continuum_kernel()
  • log_spline_basis()
  • cosine_kernel()
  • log_cosine_basis()
  • make_cosine_basis()
  • exponential_basis()
  • diffusion_basis()
  • iterative_orthogonalize_basis()
• neurotools.spatial.masking module
  • as_mask()
  • mask_to_points()
  • extend_mask()
  • pgrid()
  • nan_mask()
  • maskout()
  • trim_mask()
  • mask_crop()
  • to_image()
• neurotools.spatial.peaks module
  • blurkernel()
  • blurkernel2D()
  • conv()
  • blur()
  • findpeaks()
  • dx_op()
  • hessian_2D()
  • circle_mask()
  • fft_upsample_2D()
  • interpolate_peaks()
  • bin_spikes()
  • get_peak_density()
  • brute_force_local_2d_maxima()
• neurotools.spatial.phase module
  • population_kuramoto()
  • population_synchrony()
  • population_polar_std()
  • population_average_amplitude()
  • population_signal_dispersion()
  • population_signal_concentration()
  • population_signal_precision()
  • population_signal_phase_dispersion()
  • population_signal_phase_std()
  • population_signal_amplitude_std()
  • population_signal_amplitude_dispersion()
  • population_signal_phase_precision()
  • population_signal_amplitude_precision()
  • population_signal_description()
  • population_synchrony_linear()
  • population_phase_coherence()
  • analytic_signal_coherence()
  • population_sliding_signal_coherence()
  • sliding_population_signal_coherence()
  • population_normalized_sliding_signal_coherence()
  • population_phase_relative_sliding_kuramoto()
  • population_median_phase_velocity()
  • population_median_frequency()
• neurotools.spatial.points module
  • p2c()
  • c2p()
  • to_xypoint()
  • closest()
  • pair_neighbors()
  • paired_distances()
  • assign_to_regions()
  • collect_in_regions()
  • gaussian_from_points()
  • collect_gaussians()
• neurotools.spatial.spiking module
  • interp_bin()
• neurotools.spatial.triangulation module
  • z2xy()
  • uniquerow()
  • trianglesToEdges()
  • edgesNearby()
  • coalesce()
  • plot_edges()
  • plot_triangles()
  • mergeNearby()

Module contents